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The Emory RSPH HPC

The wiki pages provide general instructions to accessing and using the Emory RSPH high-performance computing (HPC) cluster. This cluster contains a computational platform for running our lab group's modeling simulations and analyses. The EpiModel Research Lab has dedicated access for 10 32-core nodes, and with lower-priority access to approximately 60 other 32-core nodes. Follow these steps to get started.

1. Registering for and logging in to HPC
2. Setting up your HPC environment
3. Working with files on the HPC
4. Using git on command line to access Github repositories
5. Using R via Spack on the HPC
6. Running R interactively with srun
7. Running R with a batch job with sbatch
8. Automating batch jobs with EpiModelHPC and slurmworkflow

Other Topics

1. Copying a private branch to a public repository