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10x genomics FFPE chemistry #131

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wangjiawen2013 opened this issue Feb 2, 2024 · 0 comments
Open

10x genomics FFPE chemistry #131

wangjiawen2013 opened this issue Feb 2, 2024 · 0 comments

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@wangjiawen2013
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Hi,
10x genomics has developed new technique to detect spatial gene expression of FFPE (formalin-fixed paraffin-embedded) tissue. About 20,000 probes are used to quantify the transcriptome. Cellranger now use the 20,000 probes as reference to map the reads. How to process the data using simpleaf ?
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