diff --git a/workflows/tostadas.nf b/workflows/tostadas.nf index f560db7a..61acdb86 100644 --- a/workflows/tostadas.nf +++ b/workflows/tostadas.nf @@ -195,12 +195,13 @@ workflow TOSTADAS { throw new Exception("Cannot submit to GenBank without assembly and annotation files") } - // todo test update submission if ( params.update_submission ) { UPDATE_SUBMISSION ( - RUN_UTILITY.out, - params.submission_config, - INITIAL_SUBMISSION.out.submission_files + GET_WAIT_TIME.out + params.submission_config, + INITIAL_SUBMISSION.out.submission_files, + INITIAL_SUBMISSION.out.submission_log, + '' ) } // combine the different upload_log csv files together