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[Internal] [Feature] Rework update submissions to track SAMN IDs for BioSample updates #245

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jessicarowell opened this issue Jan 8, 2025 · 1 comment
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@jessicarowell
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If update_submission flag is set to true,

  1. Look for the NCBI accession ID for the databases flagged for update
  2. Write a new submission xml file from the input tsv and including that accession ID
  3. Submit this file via ftp

Place an ❌ in a Box that Best Matches the Feature's Importance:

  • [] 1 - Most important (absolutely integral and will not use codebase at all without it)
  • 2-4 - Moderate (still using codebase for other functions but is serving as a blocker for future use-cases)
  • [] 5 - Least important (would like to see but there are no stringent expectations nor urgency for current/future use-cases) 

Any Additional Context or Information? Has There Been Any Progress Made So Far Towards this Request? Any Helpful Resources to Reference? Screenshots or Links?

@jessicarowell jessicarowell added the enhancement New feature or request label Jan 8, 2025
@jessicarowell jessicarowell self-assigned this Jan 8, 2025
@jessicarowell
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See PulseNet team doc from NCBI for added details. Need to validate geo_location and collection_date for these updates.

@jessicarowell jessicarowell added this to the v4.2.0 milestone Jan 8, 2025
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