coverage.yml

name: Coverage

concurrency:
  group: ${{ github.workflow }}#${{ github.ref }}
  cancel-in-progress: true

on:
  push:
    branches:
      - master
      - release/**
  pull_request:
    branches:
      - master
      - release/**

env:
  CMAKE_BUILD_PARALLEL_LEVEL: 3

jobs:
  coverage:
    runs-on: ubuntu-20.04
    name: "Coverage Test"
    steps:
      - name: Install packages
        run: |
          sudo apt-get update
          sudo apt-get install bison doxygen flex lcov libboost-all-dev \
            libopenmpi-dev libfl-dev ninja-build openmpi-bin python3-dev \
            python3-pip
        shell: bash
      - uses: actions/checkout@v3
        with:
          fetch-depth: 2
      - name: Build and Test for Coverage
        id: build-test
        shell: bash
        working-directory: ${{runner.workspace}}/CoreNeuron
        run:  |
          mkdir build && cd build
          cmake .. -G Ninja \
            -DCMAKE_BUILD_TYPE=Debug \
            -DCMAKE_C_FLAGS="-coverage" \
            -DCMAKE_CXX_FLAGS="-coverage" \
            -DCORENRN_ENABLE_MPI=ON \
            -DCORENRN_ENABLE_DEBUG_CODE=ON
          cmake --build .
          (cd ..;  lcov --capture  --initial --directory . --no-external --output-file build/coverage-base.info)
          ctest --output-on-failure
          (cd ..; lcov --capture  --directory . --no-external --output-file build/coverage-run.info)
          lcov --add-tracefile coverage-base.info --add-tracefile coverage-run.info --output-file coverage-combined.info
          lcov --remove coverage-combined.info --output-file coverage.info "*/external/*"
          lcov --list coverage.info
      - name: Upload to codecov.io
        run: |
          # Download codecov script and perform integrity checks
          curl https://keybase.io/codecovsecurity/pgp_keys.asc | gpg --import # One-time step 
          curl -Os https://uploader.codecov.io/latest/linux/codecov 
          curl -Os https://uploader.codecov.io/latest/linux/codecov.SHA256SUM 
          curl -Os https://uploader.codecov.io/latest/linux/codecov.SHA256SUM.sig 
          gpg --verify codecov.SHA256SUM.sig codecov.SHA256SUM 
          shasum -a 256 -c codecov.SHA256SUM 
          chmod +x codecov 
          ./codecov -f build/coverage.info