v3.0.0-ALPHA1

Alpha test release of EnrichmentMap 3.0.0.

v2.2.1-HOTFIX1

Hotfix release. Fixes 2 bugs.

EnrichmentMap v2.2.0

Bug Fixes

• Bug fixes listed here: https://github.com/BaderLab/EnrichmentMapApp/issues?q=is%3Aissue+is%3Aclosed+milestone%3A2.2_release

Features:

• New color scheme for network style.
• Updated the UI to be cleaner and more modern looking.
• Improved the performance of the gene-set similarity calculation, and made the task cancellable.

v2.2_RC1

Bug #144. Save and restore classes properly. Fix HeatMap column title

colors.

v2.1.1-HOTFIX_1

Hotfix release. Fixes bug #153.

EnrichmentMap v2.1.0

Bug fixes and Added features in 2.1.0:

Bug fixes:

• Numerous bug fixes that are outlined here: https://github.com/BaderLab/EnrichmentMapApp/issues?q=is%3Aissue+is%3Aclosed+milestone%3A2.1_release

Features:

• Revamped post analysis interface and functionality.   
• Post analysis can be run in known signature mode or signature discovery mode.  Known signature mode calculates post analysis edges for a small subset of sets.  Signature discovery mode allows for filtering of large set of potential signatures to help uncover most likely set.
• Post analysis edges can be calculated using a two sided or one sided Mann whitney test using rank files from either dataset1 or dataset2 separately.  For example, this allows the user to look for pathways that contain a significant set of up-regulated miR targets only.  
• Update g:profiler support so we no longer require a gmt file to be specified.
• Add the ability to specify the set of genes associated with the geneset in the generic enrichment file.
• Added “publication ready” button to legend panel so users can easily toggle between figure ready and normal view of network. 

v2.1_RC3

Removed AutoAnnotate

v2.1_RC1

Release Candidate 1 for version 2.1