DESCRIPTION

Package: scrattch.bigcat
Title: Iterative Clustering Analysis for Transcriptomic data for big matrix
Version: 0.0.5
Authors@R: c(person("Zizhen", "Yao", email = "zizheny@alleninstitute.org", role = c("aut")),
  person("Lucas", "Graybuck", email = "lucasg@alleninstitute.org", role = c("aut", "cre")),
  person("Cindy", "van Velthoven", email = "cindy.vanvelthoven@alleninstitute.org", role = c("aut")),
  person("Changkyu","Lee", email="Changkyul@alleninstitute.org", role = c("aut")),  
  person("Yuan","Gao", email="yuan.gao@alleninstitute.org", role = c("aut")),  
  person("Trygve", "Bakken", email = "trygveb@alleninstitute.org", role = c("aut")),
  person("Jeremy", "Miller", email = "jeremym@alleninstitute.org", role = c("aut")),	
  person("Adriana","Sedeno-Cortes", email ="adrianas@alleninstitute.org", role = c("aut")),
  person("Saroja","Somasundaram", email="sarojas@alleninstitute.org", role = c("aut")))
Description: Scalable single cell RNASeq clustering pipeline
BugReports: https://github.com/AllenInstitute/scrattch.bigcat/issues
Depends: R (>= 4.0.0)
License: GPL-3
Encoding: UTF-8
LazyData: TRUE
VignetteBuilder: knitr
RoxygenNote: 7.0.2
Imports: 
  Rcpp,
  RcppAnnoy,
  RcppEigen,
  RcppProgress,
  RcppParallel,
  BiocNeighbors,	
  Matrix,
  matrixStats,
  parallel,
  doMC,
  foreach,
  doParallel,
  data.table,
  dplyr,
  arrow,
  igraph,
  ggplot2,
  grid,
  dendextend,
  pvclust
LinkingTo: Rcpp (>= 0.11.0), RcppEigen, RcppProgress, beachmat, RcppParallel	
Suggests:
  Rtsne,
  WGCNA, 	
  knitr,	  
  rmarkdown,
  testthat,
  Rphenograph,
  covr,
  qlcMatrix