requirements.txt

aiohappyeyeballs==2.4.4
aiohttp==3.11.10
aiosignal==1.3.1
anndata==0.11.1
array_api_compat==1.9.1
asttokens==3.0.0
attrs==24.2.0
certifi==2024.8.30
charset-normalizer==3.4.0
comm==0.2.2
contourpy==1.3.1
cycler==0.12.1
debugpy==1.8.9
decorator==5.1.1
executing==2.1.0
filelock==3.16.1
fonttools==4.55.3
frozenlist==1.5.0
fsspec==2024.10.0
h5py==3.12.1
idna==3.10
ipykernel==6.29.5
ipython==8.30.0
jedi==0.19.2
Jinja2==3.1.4
joblib==1.4.2
jupyter_client==8.6.3
jupyter_core==5.7.2
kiwisolver==1.4.7
legacy-api-wrap==1.4.1
llvmlite==0.43.0
MarkupSafe==3.0.2
matplotlib==3.9.3
matplotlib-inline==0.1.7
mpmath==1.3.0
multidict==6.1.0
natsort==8.4.0
nest-asyncio==1.6.0
networkx==3.4.2
numba==0.60.0
numpy==2.0.2
nvidia-cublas-cu12==12.4.5.8
nvidia-cuda-cupti-cu12==12.4.127
nvidia-cuda-nvrtc-cu12==12.4.127
nvidia-cuda-runtime-cu12==12.4.127
nvidia-cudnn-cu12==9.1.0.70
nvidia-cufft-cu12==11.2.1.3
nvidia-curand-cu12==10.3.5.147
nvidia-cusolver-cu12==11.6.1.9
nvidia-cusparse-cu12==12.3.1.170
nvidia-nccl-cu12==2.21.5
nvidia-nvjitlink-cu12==12.4.127
nvidia-nvtx-cu12==12.4.127
packaging==24.2
pandas==2.2.3
parso==0.8.4
patsy==1.0.1
pexpect==4.9.0
pillow==11.0.0
platformdirs==4.3.6
prompt_toolkit==3.0.48
propcache==0.2.1
psutil==6.1.0
ptyprocess==0.7.0
pure_eval==0.2.3
Pygments==2.18.0
pynndescent==0.5.13
pyparsing==3.2.0
python-dateutil==2.9.0.post0
pytz==2024.2
pyzmq==26.2.0
requests==2.32.3
scanpy==1.10.4
scikit-learn==1.6.0
scipy==1.14.1
seaborn==0.13.2
session_info==1.0.0
setuptools==75.6.0
six==1.17.0
stack-data==0.6.3
statsmodels==0.14.4
stdlib-list==0.11.0
sympy==1.13.1
threadpoolctl==3.5.0
torch==2.5.1
torch-geometric==2.6.1
torchaudio==2.5.1
torchvision==0.20.1
tornado==6.4.2
tqdm==4.67.1
traitlets==5.14.3
triton==3.1.0
typing_extensions==4.12.2
tzdata==2024.2
umap-learn==0.5.7
urllib3==2.2.3
wcwidth==0.2.13
yarl==1.18.3