diff --git a/alembic/versions_backup/6173282aef08_remove_invite_info.py b/alembic/versions_backup/6173282aef08_remove_invite_info.py new file mode 100644 index 00000000..92c029a6 --- /dev/null +++ b/alembic/versions_backup/6173282aef08_remove_invite_info.py @@ -0,0 +1,24 @@ +"""remove_invite_info + +Revision ID: 6173282aef08 +Revises: f150341d2741 +Create Date: 2023-12-19 00:32:08.157538 + +""" +from typing import Sequence, Union + +from alembic import op +import sqlalchemy as sa + + +# revision identifiers, used by Alembic. +revision: str = "6173282aef08" +down_revision: Union[str, None] = "f150341d2741" +branch_labels: Union[str, Sequence[str], None] = None +depends_on: Union[str, Sequence[str], None] = None + + +def upgrade() -> None: + op.drop_column("invite", "info") + with op.batch_alter_table("notification") as batch_op: + batch_op.alter_column("target", nullable=True) diff --git a/tests/functional/__init__.py b/alembic/versions_backup/72ac2b020c7c_delete_dataset_readme_table.py similarity index 100% rename from tests/functional/__init__.py rename to alembic/versions_backup/72ac2b020c7c_delete_dataset_readme_table.py diff --git a/alembic/versions_backup/95d6e53e2578_edit_invite_table_pk.py b/alembic/versions_backup/95d6e53e2578_edit_invite_table_pk.py new file mode 100644 index 00000000..e19aa4d3 --- /dev/null +++ b/alembic/versions_backup/95d6e53e2578_edit_invite_table_pk.py @@ -0,0 +1,38 @@ +"""edit invite table PK + +Revision ID: 95d6e53e2578 +Revises: db1b62d02def +Create Date: 2023-11-28 14:58:43.869472 + +""" +from typing import Sequence, Union + +import sqlalchemy as sa +from alembic import op + + +# revision identifiers, used by Alembic. +revision: str = "95d6e53e2578" +down_revision: Union[str, None] = "db1b62d02def" +branch_labels: Union[str, Sequence[str], None] = None +depends_on: Union[str, Sequence[str], None] = None + + +def upgrade(): + connection = op.get_bind() + inspector = sa.inspect(connection) + + # Check if the table exists before dropping it + # if not inspector.has_table("invite"): + # if 'id' not in inspector.get_columns("invite"): + op.add_column("invite", sa.Column("id", sa.CHAR(36), nullable=True)) + op.execute( + "UPDATE invite SET id = uuid_in(overlay(overlay(md5(random()::text || ':' " + "|| random()::text) placing '4' from 13) placing to_hex(floor(random()*(11-8+1) + 8)::int)" + "::text from 17)::cstring);" + ) + op.execute("ALTER TABLE invite DROP CONSTRAINT invited_study_contributor_pkey") + + op.create_primary_key("id", "invite", ["id"]) + with op.batch_alter_table("invite") as batch_op: + batch_op.alter_column("study_id", nullable=True) diff --git a/alembic/versions_backup/b20e07d8924f_delete_token_fron_user_table.py b/alembic/versions_backup/b20e07d8924f_delete_token_fron_user_table.py new file mode 100644 index 00000000..5e07b699 --- /dev/null +++ b/alembic/versions_backup/b20e07d8924f_delete_token_fron_user_table.py @@ -0,0 +1,27 @@ +"""delete_token_fron_user_table + +Revision ID: b20e07d8924f +Revises: f189827ee101 +Create Date: 2023-12-13 13:31:38.810816 + +""" +from typing import Sequence, Union + +from alembic import op +import sqlalchemy as sa + + +# revision identifiers, used by Alembic. +revision: str = "b20e07d8924f" +down_revision: Union[str, None] = "f189827ee101" +branch_labels: Union[str, Sequence[str], None] = None +depends_on: Union[str, Sequence[str], None] = None + + +def upgrade() -> None: + op.drop_column("user", "token") + op.drop_column("user", "token_generated") + + +def downgrade() -> None: + pass diff --git a/alembic/versions_backup/db1b62d02def_edit_invite_table.py b/alembic/versions_backup/db1b62d02def_edit_invite_table.py new file mode 100644 index 00000000..2f9be132 --- /dev/null +++ b/alembic/versions_backup/db1b62d02def_edit_invite_table.py @@ -0,0 +1,25 @@ +"""edit invite table + +Revision ID: db1b62d02def +Revises: 72ac2b020c7c +Create Date: 2023-11-28 13:56:41.821141 + +""" +from typing import Sequence, Union + +import sqlalchemy as sa +from alembic import op + + +revision: str = "db1b62d02def" +down_revision: Union[str, None] = "72ac2b020c7c" +branch_labels: Union[str, Sequence[str], None] = None +depends_on: Union[str, Sequence[str], None] = None + + +def upgrade() -> None: + op.rename_table("invited_study_contributor", "invite") + op.add_column("invite", sa.Column("info", sa.String(), nullable=True)) + op.create_unique_constraint( + "study_per_user", "invite", ["study_id", "email_address"] + ) diff --git a/alembic/versions_backup/eee9610b2cdc_role_nullable_and_fk_user_id.py b/alembic/versions_backup/eee9610b2cdc_role_nullable_and_fk_user_id.py new file mode 100644 index 00000000..310bf7af --- /dev/null +++ b/alembic/versions_backup/eee9610b2cdc_role_nullable_and_fk_user_id.py @@ -0,0 +1,56 @@ +"""role_nullable_and_fk_user_id + +Revision ID: eee9610b2cdc +Revises: 95d6e53e2578 +Create Date: 2023-12-01 00:09:44.745776 + +""" +from typing import Sequence, Union + +import sqlalchemy as sa +import datetime +import uuid +from alembic import op + + +# revision identifiers, used by Alembic. +revision: str = "eee9610b2cdc" +down_revision: Union[str, None] = "95d6e53e2578" +branch_labels: Union[str, Sequence[str], None] = None +depends_on: Union[str, Sequence[str], None] = None + +created_at = int(datetime.datetime.now(datetime.timezone.utc).timestamp()) + +id = str(uuid.uuid4()) +hashed = str(uuid.uuid4()) + + +def upgrade() -> None: + op.add_column("invite", sa.Column("user_id", sa.CHAR(36))) + op.execute( + f'INSERT INTO "user" ("id", "email_address", "username", "hash", "created_at", "email_verified") VALUES ' + f"('{id}', 'eee9610b2cdc@fairhub.io', 'eee9610b2cdc', '{hashed}', '{created_at}', False)" + ) + + user_obj = f"SELECT * FROM user WHERE id = '{id}'" + if len(user_obj) < 1: + return "error", 403 + op.execute(f"UPDATE invite SET user_id ='{id}'") + + with op.batch_alter_table("invite") as batch_op: + batch_op.alter_column("permission", nullable=True) + batch_op.alter_column("user_id", nullable=False) + op.create_foreign_key( + "fk_user_id", + "invite", + "user", + ["user_id"], + ["id"], + ) + + with op.batch_alter_table("notification") as batch_op: + batch_op.alter_column("title", nullable=False) + batch_op.alter_column("message", nullable=False) + batch_op.alter_column("type", nullable=False) + batch_op.alter_column("target", nullable=False) + batch_op.alter_column("read", nullable=False) diff --git a/alembic/versions_backup/f150341d2741_modify_email_verification.py b/alembic/versions_backup/f150341d2741_modify_email_verification.py new file mode 100644 index 00000000..ce272600 --- /dev/null +++ b/alembic/versions_backup/f150341d2741_modify_email_verification.py @@ -0,0 +1,35 @@ +"""modify_email_verification + +Revision ID: f150341d2741 +Revises: b20e07d8924f +Create Date: 2023-12-13 20:43:24.637259 + +""" +from typing import Sequence, Union + +import sqlalchemy as sa +import datetime +from alembic import op + +# revision identifiers, used by Alembic. +revision: str = "f150341d2741" +down_revision: Union[str, None] = "b20e07d8924f" +branch_labels: Union[str, Sequence[str], None] = None +depends_on: Union[str, Sequence[str], None] = None + +created_at = int(datetime.datetime.now(datetime.timezone.utc).timestamp()) + + +def upgrade() -> None: + op.alter_column("email_verification", "token", type_=sa.String) + op.alter_column("email_verification", "user_id", type_=sa.CHAR(36)) + + op.drop_column("email_verification", "created_at") + + op.add_column( + "email_verification", sa.Column("created_at", sa.BIGINT(), nullable=True) + ) + + op.execute(f"UPDATE \"email_verification\" SET created_at ='{created_at}'") + + op.alter_column("email_verification", "created_at", nullable=False) diff --git a/alembic/versions_backup/f189827ee101_user_table_email_verfication.py b/alembic/versions_backup/f189827ee101_user_table_email_verfication.py new file mode 100644 index 00000000..28c1634e --- /dev/null +++ b/alembic/versions_backup/f189827ee101_user_table_email_verfication.py @@ -0,0 +1,36 @@ +"""user_table_email_verfication + +Revision ID: f189827ee101 +Revises: fed13d793eff +Create Date: 2023-12-11 14:54:31.303523 + +""" +from typing import Sequence, Union +import sqlalchemy as sa +import datetime +import random +from alembic import op + +# revision identifiers, used by Alembic. +revision: str = "f189827ee101" +down_revision: Union[str, None] = "fed13d793eff" +branch_labels: Union[str, Sequence[str], None] = None +depends_on: Union[str, Sequence[str], None] = None +token_generated = int(datetime.datetime.now(datetime.timezone.utc).timestamp()) +token = random.randint(10 ** (7 - 1), (10**7) - 1) + + +def upgrade(): + op.add_column("user", sa.Column("token_generated", sa.BIGINT, nullable=True)) + op.add_column("user", sa.Column("token", sa.String, nullable=True)) + op.execute(f"UPDATE \"user\" SET token_generated ='{token_generated}'") + op.execute(f"UPDATE \"user\" SET token ='{token}'") + op.execute("UPDATE invite SET info ='info'") + op.execute(f'UPDATE "user" SET email_verified = FALSE') + + with op.batch_alter_table("user") as batch_op: + batch_op.alter_column("token", nullable=False) + batch_op.alter_column("token_generated", nullable=False) + batch_op.alter_column("email_verified", nullable=False) + with op.batch_alter_table("invite") as batch_op: + batch_op.alter_column("info", nullable=False) diff --git a/alembic/versions_backup/fed13d793eff_email_verified_type.py b/alembic/versions_backup/fed13d793eff_email_verified_type.py new file mode 100644 index 00000000..fbc32a58 --- /dev/null +++ b/alembic/versions_backup/fed13d793eff_email_verified_type.py @@ -0,0 +1,27 @@ +"""email_verified_type + +Revision ID: fed13d793eff +Revises: eee9610b2cdc +Create Date: 2023-12-05 16:03:51.166254 + +""" +from typing import Sequence, Union + +from alembic import op +import sqlalchemy as sa + + +# revision identifiers, used by Alembic. +revision: str = "fed13d793eff" +down_revision: Union[str, None] = "eee9610b2cdc" +branch_labels: Union[str, Sequence[str], None] = None +depends_on: Union[str, Sequence[str], None] = None + + +def upgrade() -> None: + with op.batch_alter_table("user") as batch_op: + batch_op.alter_column( + "email_verified", + type_=sa.Boolean(), + postgresql_using="email_verified::boolean", + ) diff --git a/apis/__init__.py b/apis/__init__.py index c58a7559..caefd02b 100644 --- a/apis/__init__.py +++ b/apis/__init__.py @@ -1,7 +1,6 @@ """Initialize the api system for the backend""" from flask_restx import Api, Resource - from apis.dataset_metadata_namespace import api as dataset_metadata_namespace from apis.study_metadata_namespace import api as study_metadata_namespace @@ -98,6 +97,7 @@ "redcap", "dashboard", "utils", + # "invite_general_users", ] @@ -114,7 +114,6 @@ class HelloEverynyan(Resource): @api.response(400, "Validation Error") def get(self): """Returns a simple 'Server Active' message""" - return "Server active!" diff --git a/apis/authentication.py b/apis/authentication.py index 10407d01..e7f7e276 100644 --- a/apis/authentication.py +++ b/apis/authentication.py @@ -17,6 +17,9 @@ from jsonschema import FormatChecker, ValidationError, validate import model +from invitation.invitation import ( + send_email_verification, +) api = Namespace("Authentication", description="Authentication paths", path="/") @@ -153,14 +156,67 @@ def validate_password(instance): ).all() new_user = model.User.from_data(data) + verification = model.EmailVerification(new_user) + new_user.email_verified = False for invite in invitations: invite.study.add_user_to_study(new_user, invite.permission) model.db.session.delete(invite) model.db.session.add(new_user) + model.db.session.add(verification) model.db.session.commit() + if os.environ.get("FLASK_ENV") == "testing": + new_user.email_verified = True + if g.gb.is_on("email-verification"): + if os.environ.get("FLASK_ENV") != "testing": + send_email_verification(new_user.email_address, verification.token) return f"Hi, {new_user.email_address}, you have successfully signed up", 201 +@api.route("/auth/email-verification/confirm") +class EmailVerification(Resource): + @api.response(200, "Success") + @api.response(400, "Validation Error") + # @api.marshal_with(contributors_model) + def post(self): + data: Union[Any, dict] = request.json + if "token" not in data or "email" not in data: + return "email or token are required", 422 + user = model.User.query.filter_by(email_address=data["email"]).one_or_none() + if not user: + return "user not found", 404 + if user.email_verified: + return "user already verified", 422 + if not user.verify_token(data["token"]): + return "Token invalid or expired", 422 + user.email_verified = True + model.db.session.commit() + return "Email verified", 201 + + +@api.route("/auth/email-verification/resend") +class GenerateVerification(Resource): + @api.response(200, "Success") + @api.response(400, "Validation Error") + # @api.marshal_with(contributors_model) + def post(self): + data: Union[Any, dict] = request.json + user = model.User.query.filter_by(email_address=data["email"]).one_or_none() + if not user: + return "user not found", 404 + if user.email_verified: + return "user already verified", 422 + + # user.email_verified = True + token = user.generate_token() + + if g.gb.is_on("email-verification"): + if os.environ.get("FLASK_ENV") != "testing": + send_email_verification(user.email_address, token) + + model.db.session.commit() + return "Your email is verified", 201 + + @api.route("/auth/login") class Login(Resource): """Login class is used to login users to the system""" @@ -173,7 +229,6 @@ def post(self): """logs in user and handles few authentication errors. Also, it sets token for logged user along with expiration date""" data: Union[Any, dict] = request.json - email_address = data["email_address"] def validate_is_valid_email(instance): @@ -207,7 +262,6 @@ def validate_is_valid_email(instance): validate(instance=data, schema=schema, format_checker=format_checker) except ValidationError as e: return e.message, 400 - user = model.User.query.filter_by(email_address=email_address).one_or_none() if not user: return "Invalid credentials", 401 @@ -249,7 +303,31 @@ def validate_is_valid_email(instance): resp.set_cookie( "token", encoded_jwt_code, secure=True, httponly=True, samesite="None" ) - resp.status_code = 200 + g.user = user + + # if g.gb.is_on("email-verification"): + # if os.environ.get("FLASK_ENV") != "testing": + # if not check_trusted_device(): + # title = "you logged in" + # device_ip = request.remote_addr + # notification_type = "info" + # target = "" + # read = False + # send_notification = model.Notification.from_data( + # user, + # { + # "title": title, + # "message": device_ip, + # "type": notification_type, + # "target": target, + # "read": read, + # }, + # ) + # model.db.session.add(send_notification) + # model.db.session.commit() + # signin_notification(user, device_ip) + # add_user_to_device_list(resp, user) + # resp.status_code = 200 return resp @@ -307,7 +385,10 @@ def authorization(): if bool(re.search(route_pattern, request.path)): return if g.user: - return + if os.environ.get("FLASK_ENV") == "testing": + return + if g.user.email_verified: + return raise UnauthenticatedException("Access denied", 403) @@ -318,6 +399,9 @@ def is_granted(permission: str, study=None): ).first() if not contributor: return False + if os.environ.get("FLASK_ENV") != "testing": + if not g.user.email_verified: + return False role = { "owner": [ "owner", diff --git a/apis/contributor.py b/apis/contributor.py index 9f282312..d1850bca 100644 --- a/apis/contributor.py +++ b/apis/contributor.py @@ -1,10 +1,12 @@ from collections import OrderedDict from typing import Any, Dict, List, Union +import os from flask import Response, g, request from flask_restx import Namespace, Resource, fields import model +from invitation.invitation import send_access_contributors, send_invitation_study from .authentication import is_granted @@ -20,16 +22,14 @@ @api.route("/study//contributor") -class AddContributor(Resource): +class AllContributors(Resource): @api.doc("contributor list") @api.response(200, "Success") @api.response(400, "Validation Error") # @api.marshal_with(contributors_model) def get(self, study_id: int): contributors = model.StudyContributor.query.filter_by(study_id=study_id).all() - invited_contributors = model.StudyInvitedContributor.query.filter_by( - study_id=study_id - ).all() + invited_contributors = model.StudyInvitedContributor.query.filter_by(study_id=study_id).all() contributors_list = [c.to_dict() for c in contributors] + [ c.to_dict() for c in invited_contributors @@ -40,6 +40,7 @@ def get(self, study_id: int): @api.response(400, "Validation Error") # @api.marshal_with(contributors_model) def post(self, study_id: int): + study_obj = model.Study.query.get(study_id) if not is_granted("invite_contributor", study_obj): return "Access denied, you can not modify study", 403 @@ -49,7 +50,9 @@ def post(self, study_id: int): user = model.User.query.filter_by(email_address=email_address).first() permission = data["role"] contributor_ = None - + study_name = study_obj.title + first_name = user.user_details.first_name if user else "" + last_name = user.user_details.last_name if user else "" try: if user: contributor_ = study_obj.add_user_to_study(user, permission) @@ -59,6 +62,23 @@ def post(self, study_id: int): except model.StudyException as ex: return ex.args[0], 409 model.db.session.commit() + if os.environ.get("FLASK_ENV") != "testing": + if g.gb.is_on("email-verification"): + if user: + send_access_contributors( + email_address, + study_obj, + first_name, + last_name, + contributor_.permission, + ) + else: + send_invitation_study( + email_address, + contributor_.token, + study_name, + contributor_.permission, + ) return contributor_.to_dict(), 201 @@ -100,7 +120,6 @@ def put(self, study_id: int, user_id: int): if not can_grant: return f"User cannot grant {permission}", 403 - # TODO: Owners downgrading themselves if user != g.user: grantee_level = list(grants.keys()).index(grantee.permission) # 1 new_level: int = list(grants.keys()).index(str(permission)) # 2 diff --git a/app.py b/app.py index 00f93415..07e9764f 100644 --- a/app.py +++ b/app.py @@ -8,11 +8,12 @@ import click import jwt -from flask import Flask, g, request +from flask import Flask, request, g from flask_bcrypt import Bcrypt from flask_cors import CORS +from flask_mailman import Mail from growthbook import GrowthBook -from sqlalchemy import MetaData, inspect +from sqlalchemy import MetaData, inspect, text from sqlalchemy.ext.compiler import compiles from sqlalchemy.schema import DropTable from waitress import serve @@ -21,12 +22,17 @@ import config import model from apis import api -from apis.authentication import UnauthenticatedException, authentication, authorization +from apis.authentication import ( + UnauthenticatedException, + authentication, + authorization, +) from apis.exception import ValidationException # from pyfairdatatools import __version__ bcrypt = Bcrypt() +mail = Mail() # Add Cascade to Table Drop Call in destroy-schema CLI command @@ -76,6 +82,7 @@ def create_app(config_module=None, loglevel="INFO"): bcrypt.init_app(app) caching.cache.init_app(app) + mail.init_app(app) cors_origins = [ "https://brave-ground-.*-.*.centralus.2.azurestaticapps.net", # noqa E501 # pylint: disable=line-too-long # pylint: disable=anomalous-backslash-in-string "https://staging.app.fairhub.io", @@ -125,15 +132,15 @@ def create_schema(): with engine.begin(): model.db.create_all() - @app.cli.command("destroy-schema") - def destroy_schema(): - """Create the database schema.""" - # If DB is Azure, Skip - if config.FAIRHUB_DATABASE_URL.find("azure") > -1: - return - engine = model.db.session.get_bind() - with engine.begin(): - model.db.drop_all() + # @app.cli.command("destroy-schema") + # def destroy_schema(): + # """Create the database schema.""" + # # If DB is Azure, Skip + # if config.FAIRHUB_DATABASE_URL.find("azure") > -1: + # return + # engine = model.db.session.get_bind() + # with engine.begin(): + # model.db.drop_all() @app.cli.command("cycle-schema") def cycle_schema(): @@ -285,6 +292,20 @@ def on_after_request(resp): def validation_exception_handler(error): return error.args[0], 422 + @app.cli.command("destroy-schema") + def destroy_schema(): + """destroy the database schema.""" + + # if db is azure, then skip + if config.FAIRHUB_DATABASE_URL.find("azure") > -1: + return + + engine = model.db.session.get_bind() + + with engine.begin() as conn: + model.db.drop_all() + conn.execute(text("DROP TABLE IF EXISTS alembic_version")) # type: ignore + with app.app_context(): engine = model.db.session.get_bind() metadata = MetaData() diff --git a/config.py b/config.py index a198d1c4..22e48fdf 100644 --- a/config.py +++ b/config.py @@ -24,3 +24,6 @@ def get_env(key): FAIRHUB_BLOB_STORAGE_REDCAP_ETL_SAS_CONNECTION = get_env("FAIRHUB_TEMP_BLOB_STORAGE_REDCAP_ETL_SAS_CONNECTION") FAIRHUB_BLOB_STORAGE_REDCAP_ETL_CONTAINER = get_env("FAIRHUB_TEMP_BLOB_STORAGE_REDCAP_ETL_CONTAINER") FAIRHUB_GROWTHBOOK_CLIENT_KEY = get_env("FAIRHUB_GROWTHBOOK_CLIENT_KEY") +FAIRHUB_SMTP_CONNECTION_STRING = get_env("FAIRHUB_SMTP_CONNECTION_STRING") +FAIRHUB_SMTP_SENDER_EMAIL_ADDRESS = get_env("FAIRHUB_SMTP_SENDER_EMAIL_ADDRESS") +FAIRHUB_FRONTEND_URL = get_env("FAIRHUB_FRONTEND_URL") diff --git a/db.py b/db.py new file mode 100644 index 00000000..f0b13d6f --- /dev/null +++ b/db.py @@ -0,0 +1,3 @@ +from flask_sqlalchemy import SQLAlchemy + +db = SQLAlchemy() diff --git a/dev/alembic.old/versions/72ac2b020c7c_delete_dataset_readme_table.py b/dev/alembic.old/versions/72ac2b020c7c_delete_dataset_readme_table.py index 5fac771b..900bd0b9 100644 --- a/dev/alembic.old/versions/72ac2b020c7c_delete_dataset_readme_table.py +++ b/dev/alembic.old/versions/72ac2b020c7c_delete_dataset_readme_table.py @@ -9,7 +9,6 @@ from typing import Sequence, Union import alembic -import sqlalchemy as sa # revision identifiers, used by Alembic. diff --git a/invitation/invitation.py b/invitation/invitation.py new file mode 100644 index 00000000..00c0e1b9 --- /dev/null +++ b/invitation/invitation.py @@ -0,0 +1,203 @@ +from flask import render_template +import config +from azure.communication.email import EmailClient + + +def azure_email_connection(html_content, subject: str, to: str): + connection_string = config.FAIRHUB_SMTP_CONNECTION_STRING + email_client = EmailClient.from_connection_string(connection_string) + message = { + "content": { + "subject": subject, + "html": html_content + }, + "recipients": { + "to": [ + { + "address": to, + "displayName": "Customer Name" + } + ] + }, + "senderAddress": config.FAIRHUB_SMTP_SENDER_EMAIL_ADDRESS + } + + email_client.begin_send(message) + # poller = email_client.begin_send(message) + # result = poller.result() + + +def send_invitation_study(to, token, study_name, role): + accept_url = f"{config.FAIRHUB_FRONTEND_URL}auth/signup?code={token}&email={to}" + html_content = render_template( + "accept_study_invitation.html", + token=token, + accept_url=accept_url, + study_name=study_name, + role=role, + to=to, + ) + subject, from_email, to = ( + f"You have been invited to {study_name} invitation", + "aydan.gasimova2@example.com", + to, + ) + + # msg = EmailMessage(subject, html_content, from_email, [to]) + # msg.content_subtype = "html" + # msg.send() + azure_email_connection(html_content, subject, to) + + +def send_access_contributors(to, study, first_name, last_name, role): + accept_url = f"{config.FAIRHUB_FRONTEND_URL}study/{study.id}/overview" + html_content = render_template( + "invite_contributors.html", + accept_url=accept_url, + first_name=first_name, + last_name=last_name, + study_name=study.title, + study_id=study.id, + role=role, + ) + subject, from_email, to = ( + f"You have been invited to {study.title} invitation", + "aydan.gasimova2@example.com", + to, + ) + # msg = EmailMessage(subject, html_content, from_email, [to]) + # msg.content_subtype = "html" + # msg.send() + azure_email_connection(html_content, subject, to) + + +# def send_invitation_general(to, token): +# accept_url = f"{config.FAIRHUB_FRONTEND_URL}auth/signup?code={token}&email={to}" +# html_content = render_template( +# "accept_general_invitation.html", token=token, accept_url=accept_url, to=to +# ) +# subject, from_email, to = ( +# f"You have been invited to signup to FAIRhub", +# "aydan.gasimova2@example.com", +# to, +# ) +# +# # msg = EmailMessage(subject, html_content, from_email, [to]) +# # msg.content_subtype = "html" +# # msg.send() +# azure_email_connection(html_content, subject) +# + +def send_email_verification(email_address, token): + verification_url = ( + f"{config.FAIRHUB_FRONTEND_URL}auth/verify-email?email=" + f"{email_address}&token={token}" + ) + subject, from_email, to = ( + f"Verify email address", + "aydan.gasimova2@example.com", + email_address, + ) + html_content = render_template( + "email_verification.html", + token=token, + verification_url=verification_url, + email=email_address, + ) + # msg = EmailMessage(subject, html_content, from_email, [email_address]) + # msg.content_subtype = "html" + # msg.send() + azure_email_connection(html_content, subject, to) + + +def signin_notification(user, device_ip): + user_profile_url = f"{config.FAIRHUB_FRONTEND_URL}studies" + subject, from_email, to = ( + f"Login notification", + "aydan.gasimova2@example.com", + user.email_address, + ) + html_content = render_template( + "device_notification.html", + user_profile_url=user_profile_url, + device_ip=device_ip, + ) + # msg = EmailMessage(subject, html_content, from_email, [user.email_address]) + # msg.content_subtype = "html" + # msg.send() + azure_email_connection(html_content, subject, to) + + +# def get_config(): +# if os.environ.get("FLASK_ENV") == "testing": +# config_module_name = "pytest_config" +# else: +# config_module_name = "config" +# +# config_module = importlib.import_module(config_module_name) +# +# if os.environ.get("FLASK_ENV") == "testing": +# # If testing, use the 'TestConfig' class for accessing 'secret' +# config = config_module.TestConfig +# else: +# config = config_module +# +# return config + + +# Get list of user ids that have previously authenticated on this device +# def get_device_user_list() -> list[str]: +# # FIX THE TYPE OF THE TOKEN["USERS"], IT WAS GETTING ERROR SINCE token returns a dict instead of list +# # Check if cookie exists +# if "token_device" not in request.cookies: +# return [] +# +# # Get value from cookie +# cookie = request.cookies.get("token_device") +# if not cookie: +# return [] +# +# token = {} +# config = get_config() +# try: +# token = jwt.decode(cookie, config.FAIRHUB_SECRET, algorithms=["HS256"]) +# except jwt.ExpiredSignatureError: +# return [] +# +# if "users" not in token: +# return [] +# +# return token["users"] +# +# +# def add_user_to_device_list(response: Response, user) -> None: +# users = get_device_user_list() +# if user.id not in users: +# users.append(user.id) +# +# config = get_config() +# expiration = datetime.datetime.now(timezone.utc) + datetime.timedelta(days=365) +# cookie = jwt.encode( +# { +# "users": users, +# "exp": expiration, +# }, +# config.FAIRHUB_SECRET, +# algorithm="HS256", +# ) +# +# response.set_cookie( +# "token_device", +# cookie, +# secure=True, +# httponly=True, +# samesite="None", +# expires=expiration, +# ) + +# +# def check_trusted_device() -> bool: +# users = get_device_user_list() +# for user in users: +# print("User known: " + user) +# return g.user.id in users diff --git a/model/email_verification.py b/model/email_verification.py index 8961b8f2..43a582de 100644 --- a/model/email_verification.py +++ b/model/email_verification.py @@ -1,17 +1,22 @@ import datetime +import random +import uuid from datetime import timezone from .db import db class EmailVerification(db.Model): # type: ignore - def __init__(self): + def __init__(self, user): self.created_at = datetime.datetime.now(timezone.utc).timestamp() + self.id = str(uuid.uuid4()) + self.token = str(random.randint(10 ** (7 - 1), (10**7) - 1)) + self.user = user __tablename__ = "email_verification" id = db.Column(db.CHAR(36), primary_key=True) - token = db.Column(db.CHAR(36), nullable=False) - created_at = db.Column(db.CHAR(36), nullable=False) + token = db.Column(db.String, nullable=False) + created_at = db.Column(db.BigInteger, nullable=False) user_id = db.Column(db.CHAR(36), db.ForeignKey("user.id"), nullable=False) user = db.relationship("User", back_populates="email_verification") diff --git a/model/notification.py b/model/notification.py index b123c188..72fdfae4 100644 --- a/model/notification.py +++ b/model/notification.py @@ -6,17 +6,18 @@ class Notification(db.Model): # type: ignore - def __init__(self): + def __init__(self, user): self.id = str(uuid.uuid4()) self.created_at = datetime.datetime.now(timezone.utc).timestamp() + self.user = user __tablename__ = "notification" id = db.Column(db.CHAR(36), primary_key=True) - title = db.Column(db.String, nullable=True) - message = db.Column(db.String, nullable=True) - type = db.Column(db.String, nullable=True) + title = db.Column(db.String, nullable=False) + message = db.Column(db.String, nullable=False) + type = db.Column(db.String, nullable=False) target = db.Column(db.String, nullable=True) - read = db.Column(db.BOOLEAN, nullable=True) + read = db.Column(db.BOOLEAN, nullable=False) created_at = db.Column(db.BigInteger, nullable=False) user_id = db.Column(db.CHAR(36), db.ForeignKey("user.id"), nullable=False) @@ -34,10 +35,10 @@ def to_dict(self): } @staticmethod - def from_data(data: dict): - user = Notification() - user.update(data) - return user + def from_data(user, data: dict): + notification = Notification(user) + notification.update(data) + return notification def update(self, data: dict): self.title = data["title"] diff --git a/model/study.py b/model/study.py index d09312a1..5d634911 100644 --- a/model/study.py +++ b/model/study.py @@ -179,7 +179,9 @@ def to_dict(self): self.study_description.brief_summary if self.study_description else None ), "owner": owner.to_dict()["id"] if owner else None, - "role": contributor_permission.to_dict()["role"], + "role": contributor_permission.to_dict()["role"] + if contributor_permission + else None, } def to_dict_study_metadata(self): diff --git a/model/user.py b/model/user.py index 9e741efc..f88362a9 100644 --- a/model/user.py +++ b/model/user.py @@ -15,28 +15,53 @@ def __init__(self, password): self.created_at = datetime.datetime.now(datetime.timezone.utc).timestamp() self.set_password(password) self.user_details = model.UserDetails(self) + self.email_verified = False + db.Column(db.BigInteger, nullable=False) __tablename__ = "user" id = db.Column(db.CHAR(36), primary_key=True) email_address = db.Column(db.String, nullable=False, unique=True) username = db.Column(db.String, nullable=False, unique=True) hash = db.Column(db.String, nullable=False) created_at = db.Column(db.BigInteger, nullable=False) - email_verified = db.Column(db.String, nullable=True) + email_verified = db.Column(db.BOOLEAN, nullable=True) - study_contributors = db.relationship("StudyContributor", back_populates="user") - email_verification = db.relationship("EmailVerification", back_populates="user") - user_details = db.relationship("UserDetails", uselist=False, back_populates="user") - token_blacklist = db.relationship("TokenBlacklist", back_populates="user") - notification = db.relationship("Notification", back_populates="user") + study_contributors = db.relationship( + "StudyContributor", + back_populates="user", + cascade="all, delete", + ) + email_verification = db.relationship( + "EmailVerification", + back_populates="user", + cascade="all, delete", + ) + user_details = db.relationship( + "UserDetails", + uselist=False, + back_populates="user", + cascade="all, delete", + ) + token_blacklist = db.relationship( + "TokenBlacklist", + back_populates="user", + cascade="all, delete", + ) + notification = db.relationship( + "Notification", + back_populates="user", + cascade="all, delete", + ) def to_dict(self): + # latest_object = max(self.email_verification, key=lambda x: x.created_at) if self.email_verification else None return { "id": self.id, "email_address": self.email_address, "username": self.username, "first_name": self.user_details.first_name if self.user_details else None, "last_name": self.user_details.last_name if self.user_details else None, + "email_verified": self.email_verified, } @staticmethod @@ -66,3 +91,33 @@ def check_password(self, password: str): app.bcrypt.generate_password_hash(password).decode("utf-8") is_valid = app.bcrypt.check_password_hash(self.hash, password) return is_valid + + def verify_token(self, token: str) -> bool: + latest_object = ( + max(self.email_verification, key=lambda x: x.created_at) + if self.email_verification + else None + ) + if token != latest_object.token: + return False + current_time = datetime.datetime.now() + datetime_obj = datetime.datetime.utcfromtimestamp(self.created_at) + formatted_time = datetime_obj.strftime("%Y-%m-%d %H:%M:%S.%f") + created_time = datetime.datetime.strptime( + formatted_time, "%Y-%m-%d %H:%M:%S.%f" + ) + return created_time - current_time > datetime.timedelta(minutes=15) + + def generate_token(self) -> str: + email_verification = model.EmailVerification(self) + db.session.add(email_verification) + db.session.commit() + return email_verification.token + + def change_email(self, email: str): + if email == self.email_address: + return + + self.email_verified = False + self.email_address = email + self.generate_token() diff --git a/poetry.lock b/poetry.lock index 7b826e9c..0cff3aa2 100644 --- a/poetry.lock +++ b/poetry.lock @@ -37,14 +37,14 @@ dev = ["black", "coverage", "isort", "pre-commit", "pyenchant", "pylint"] [[package]] name = "anyio" -version = "4.2.0" +version = "4.4.0" description = "High level compatibility layer for multiple asynchronous event loop implementations" category = "dev" optional = false python-versions = ">=3.8" files = [ - {file = "anyio-4.2.0-py3-none-any.whl", hash = "sha256:745843b39e829e108e518c489b31dc757de7d2131d53fac32bd8df268227bfee"}, - {file = "anyio-4.2.0.tar.gz", hash = "sha256:e1875bb4b4e2de1669f4bc7869b6d3f54231cdced71605e6e64c9be77e3be50f"}, + {file = "anyio-4.4.0-py3-none-any.whl", hash = "sha256:c1b2d8f46a8a812513012e1107cb0e68c17159a7a594208005a57dc776e1bdc7"}, + {file = "anyio-4.4.0.tar.gz", hash = "sha256:5aadc6a1bbb7cdb0bede386cac5e2940f5e2ff3aa20277e991cf028e0585ce94"}, ] [package.dependencies] @@ -151,14 +151,14 @@ test = ["dateparser (>=1.0.0,<2.0.0)", "pre-commit", "pytest", "pytest-cov", "py [[package]] name = "art" -version = "6.1" +version = "6.2" description = "ASCII Art Library For Python" category = "main" optional = false python-versions = ">=3.5" files = [ - {file = "art-6.1-py3-none-any.whl", hash = "sha256:159819c418001467f8d79616fa0814277deac97c8a363d1eb3e7c0a31526bfc3"}, - {file = "art-6.1.tar.gz", hash = "sha256:6ab3031e3b7710039e73497b0e750cadfe04d4c1279ce3a123500dbafb9e1b64"}, + {file = "art-6.2-py3-none-any.whl", hash = "sha256:d632d1d3f5fabcaf8673abe934b51df0017bc914d106e89d45ae4ebef0e3149a"}, + {file = "art-6.2.tar.gz", hash = "sha256:506a0c4f261289a0e0d088de7beffcb1835078c4e44b0c5353bdaf47b490e76f"}, ] [package.extras] @@ -250,6 +250,35 @@ tests = ["attrs[tests-no-zope]", "zope-interface"] tests-mypy = ["mypy (>=1.6)", "pytest-mypy-plugins"] tests-no-zope = ["attrs[tests-mypy]", "cloudpickle", "hypothesis", "pympler", "pytest (>=4.3.0)", "pytest-xdist[psutil]"] +[[package]] +name = "azure-common" +version = "1.1.28" +description = "Microsoft Azure Client Library for Python (Common)" +category = "main" +optional = false +python-versions = "*" +files = [ + {file = "azure-common-1.1.28.zip", hash = "sha256:4ac0cd3214e36b6a1b6a442686722a5d8cc449603aa833f3f0f40bda836704a3"}, + {file = "azure_common-1.1.28-py2.py3-none-any.whl", hash = "sha256:5c12d3dcf4ec20599ca6b0d3e09e86e146353d443e7fcc050c9a19c1f9df20ad"}, +] + +[[package]] +name = "azure-communication-email" +version = "1.0.0" +description = "Microsoft Azure MyService Management Client Library for Python" +category = "main" +optional = false +python-versions = ">=3.7" +files = [ + {file = "azure-communication-email-1.0.0.zip", hash = "sha256:5df96b8b4389696244982ffc3740722f1948abb289f19af00ce2e1c534450095"}, + {file = "azure_communication_email-1.0.0-py3-none-any.whl", hash = "sha256:b580ccfc9f1372d0b65f235334e569f3909894316bc3203bd9deb5760612693a"}, +] + 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hash = "sha256:952df858fb3164426c976d9338d3961e8e8b3758e2e059e0f754b8c4262625ee"}, ] [package.extras] -docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (<7.2.5)", "sphinx (>=3.5)", "sphinx-lint"] -testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy (>=0.9.1)", "pytest-ruff"] +docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"] +testing = ["big-O", "jaraco.functools", "jaraco.itertools", "jaraco.test", "more-itertools", "pytest (>=6,!=8.1.*)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy", "pytest-ruff (>=0.2.1)"] [metadata] lock-version = "2.0" python-versions = "^3.10" -content-hash = "cbed924469a5f0bbc91cec5bd6f054f02434a02bcc481059fffab9481583adc0" +content-hash = "6e0584b39354841ea870ef44b3b8c27ffde8cb292d8a1dad071340ab5625682b" diff --git a/pyproject.toml b/pyproject.toml index e1dffbd8..e6790c7d 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -36,8 +36,10 @@ Flask-Cors = "^4.0.0" flask-restx = "^1.1.0" waitress = "^2.1.2" -# Email +# Email flask-mail = "^0.9.1" +flask-mailman = "^1.0.0" +azure-communication-email = "^1.0.0" # API Client requests = "^2.31.0" diff --git a/sql/init.sql b/sql/init.sql index 824179be..ce042e38 100644 --- a/sql/init.sql +++ b/sql/init.sql @@ -386,23 +386,23 @@ INSERT INTO "dataset_title" ("id", "title", "type", "dataset_id") VALUES ('02937b58-268d-486d-ad63-55a79b39ea9c', 'title', 'na', '00000000-0000-0000-0000-000000000001'); /*!40000 ALTER TABLE "dataset_title" ENABLE KEYS */; --- Dumping structure for table public.invited_study_contributor -CREATE TABLE IF NOT EXISTS "invited_study_contributor" ( +-- Dumping structure for table public.invite +CREATE TABLE IF NOT EXISTS "invite" ( "email_address" VARCHAR NOT NULL, "permission" VARCHAR NOT NULL, "study_id" CHAR(36) NOT NULL, "invited_on" BIGINT NOT NULL, PRIMARY KEY ("email_address", "study_id"), - CONSTRAINT "invited_study_contributor_study_id_fkey" FOREIGN KEY ("study_id") REFERENCES "study" ("id") ON UPDATE NO ACTION ON DELETE NO ACTION + CONSTRAINT "invite_study_id_fkey" FOREIGN KEY ("study_id") REFERENCES "study" ("id") ON UPDATE NO ACTION ON DELETE NO ACTION ); --- Dumping data for table public.invited_study_contributor: 3 rows -/*!40000 ALTER TABLE "invited_study_contributor" DISABLE KEYS */; -INSERT INTO "invited_study_contributor" ("email_address", "permission", "study_id", "invited_on") VALUES +-- Dumping data for table public.invite: 3 rows +/*!40000 ALTER TABLE "invite" DISABLE KEYS */; +INSERT INTO "invite" ("email_address", "permission", "study_id", "invited_on") VALUES ('Aliya_Herman@yahoo.com', 'editor', '00000000-0000-0000-0000-000000000001', 1693805470), ('Anastacio50@hotmail.com', 'viewer', '00000000-0000-0000-0000-000000000001', 1693805470), ('Edward0@gmail.com', 'viewer', '00000000-0000-0000-0000-000000000001', 1693805470); -/*!40000 ALTER TABLE "invited_study_contributor" ENABLE KEYS */; +/*!40000 ALTER TABLE "invite" ENABLE KEYS */; -- Dumping structure for table public.participant CREATE TABLE IF NOT EXISTS "participant" ( diff --git a/sql/init_timezones.sql b/sql/init_timezones.sql index bda50aa5..b38ac176 100644 --- a/sql/init_timezones.sql +++ b/sql/init_timezones.sql @@ -438,24 +438,24 @@ INSERT INTO "dataset_title" ("id", "title", "type", "dataset_id") VALUES ('02937b58-268d-486d-ad63-55a79b39ea9c', 'title', 'na', '00000000-0000-0000-0000-000000000001'); /*!40000 ALTER TABLE "dataset_title" ENABLE KEYS */; --- Dumping structure for table public.invited_study_contributor -CREATE TABLE IF NOT EXISTS "invited_study_contributor" ( +-- Dumping structure for table public.invite +CREATE TABLE IF NOT EXISTS "invite" ( "email_address" VARCHAR NOT NULL, "permission" VARCHAR NOT NULL, "study_id" CHAR(36) NOT NULL, "invited_on" BIGINT NOT NULL, PRIMARY KEY ("email_address", "study_id"), - CONSTRAINT "invited_study_contributor_study_id_fkey" FOREIGN KEY ("study_id") REFERENCES "study" ("id") ON UPDATE NO ACTION ON DELETE NO ACTION + CONSTRAINT "invite_study_id_fkey" FOREIGN KEY ("study_id") REFERENCES "study" ("id") ON UPDATE NO ACTION ON DELETE NO ACTION ); --- Dumping data for table public.invited_study_contributor: -1 rows -/*!40000 ALTER TABLE "invited_study_contributor" DISABLE KEYS */; -INSERT INTO "invited_study_contributor" ("email_address", "permission", "study_id", "invited_on") VALUES +-- Dumping data for table public.invite: -1 rows +/*!40000 ALTER TABLE "invite" DISABLE KEYS */; +INSERT INTO "invite" ("email_address", "permission", "study_id", "invited_on") VALUES ('Aliya_Herman@yahoo.com', 'editor', '00000000-0000-0000-0000-000000000001', 1693805470), ('Anastacio50@hotmail.com', 'viewer', '00000000-0000-0000-0000-000000000001', 1693805470), ('Edward0@gmail.com', 'viewer', '00000000-0000-0000-0000-000000000001', 1693805470), ('Jailyn17@gmail.com', 'viewer', '00000000-0000-0000-0000-000000000002', 1693805470); -/*!40000 ALTER TABLE "invited_study_contributor" ENABLE KEYS */; +/*!40000 ALTER TABLE "invite" ENABLE KEYS */; -- Dumping structure for table public.participant CREATE TABLE IF NOT EXISTS "participant" ( diff --git a/sql/specific_tables.sql b/sql/specific_tables.sql index 4147a2e5..ca90c0e8 100644 --- a/sql/specific_tables.sql +++ b/sql/specific_tables.sql @@ -46,7 +46,7 @@ INSERT INTO "dataset_contributor" ("id", "first_name", "last_name", "name_type", ('00000000-0000-0000-0000-000000000001', 'bhavesh', 'patel', 'type_name', 'identifier', 'scheme', 'scheme uri', 'true', 'type', '00000000-0000-0000-0000-000000000001'); -INSERT INTO "invited_study_contributor" ("email_address", "permission", "invited_on", "study_id") VALUES +INSERT INTO "invite" ("email_address", "permission", "invited_on", "study_id") VALUES ('aydan.gasimova@gmail.com', 'owner', '2023-08-13 16:34:16', '00000000-0000-0000-0000-000000000001'), ('bhavesh.patel@gmail.com', 'owner', '2023-08-13 16:34:16', '00000000-0000-0000-0000-000000000003'), ('sanjay.soundarajan@@gmail.com', 'owner', '2023-08-13 16:34:16', '00000000-0000-0000-0000-000000000004'); diff --git a/templates/accept_general_invitation.html b/templates/accept_general_invitation.html new file mode 100644 index 00000000..68e3731f --- /dev/null +++ b/templates/accept_general_invitation.html @@ -0,0 +1,61 @@ + + + + + Invitation + + + +
+ +

Hello!

+
+

Congratulations! You're one step away from joining fairhub.io and discovering a whole new experience tailored just for you.

+

Please click the button to signup.

+ Signup + +

Or see here: + + {{ accept_url }} + +

+ +

Need assistance or have questions? Our dedicated support team is here to help. Reach out to us at help@fairhub.io for prompt assistance. +

+ + +
+ + +
+ + + \ No newline at end of file diff --git a/templates/accept_study_invitation.html b/templates/accept_study_invitation.html new file mode 100644 index 00000000..d7aeecc0 --- /dev/null +++ b/templates/accept_study_invitation.html @@ -0,0 +1,57 @@ + + + + Invitation + + + +
+
+

Hello!

+
+

We are pleased to grant you {{ 'a' if role == "viewer" else "an"}} {{ role }} access to {{ study_name }}!

+

Your authorization enables you to delve into this specialized + study area and explore its curated resources.

+

Please click the button to accept the invitation.

+ Accept Invitation and Signup + +

Or see here: + + {{ accept_url }} + +

+

Need assistance or have questions? Our dedicated support team is here to help. Reach out to us at help@fairhub.io for prompt assistance.

+
+
Sincerely,
+
FAIRhub team
+
+
+ diff --git a/templates/device_notification.html b/templates/device_notification.html new file mode 100644 index 00000000..a7e13890 --- /dev/null +++ b/templates/device_notification.html @@ -0,0 +1,61 @@ + + + + + Email verification + + + + +
+ +

Hello!

+
+

We detected you have logged in from {{ device_ip }}

+

If you do not recall this operation please click to change your password

+ Change Your Password +

+ Or see here: + http://localhost:3000/studies +

+

Need assistance or have questions? Our dedicated support team is here to help. Reach out to us at help@fairhub.io for prompt assistance.

+
+
Sincerely,
+
FAIRhub team
+
+ + + \ No newline at end of file diff --git a/templates/email_verification.html b/templates/email_verification.html new file mode 100644 index 00000000..eb575352 --- /dev/null +++ b/templates/email_verification.html @@ -0,0 +1,55 @@ + + + + + Email verification + + + + +
+ +
+

Hello {{ email}}!

+ +
+

Please verify your email address by clicking the button below:

+ Verify Email Address + +

Or see here: + + {{ verification_url }} +

+

Need assistance or have questions? Our dedicated support team is here to help. Reach out to us at help@fairhub.io for prompt assistance.

+
+
Sincerely,
+
FAIRhub team
+
+ + + \ No newline at end of file diff --git a/templates/invite_contributors.html b/templates/invite_contributors.html new file mode 100644 index 00000000..853b3bf6 --- /dev/null +++ b/templates/invite_contributors.html @@ -0,0 +1,67 @@ + + + + + Invitation + + + + +
+ +

Hello {{ ' ' ~ first_name if first_name else '' }}{{ ' ' ~ last_name if first_name else '' }}!

+
+

We are pleased to grant you {{ 'a' if role == "viewer" else "an"}} {{ role }} access to {{ study_name }}!

+

Your authorization enables you to delve into this specialized + study area and explore its curated resources.

+

Please click the button to accept the invitation:

+ View Study + +

Or see here: + + {{ accept_url }} + +

+

Need assistance or have questions? Our dedicated support team is here to help. Reach out to us at + help@fairhub.io + for prompt assistance. +

+
+
Sincerely,
+
FAIRhub team
+
+ + + \ No newline at end of file diff --git a/tests/conftest.py b/tests/conftest.py index 96c63dff..a466dcec 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -6,7 +6,6 @@ import pytest from dotenv import load_dotenv - from app import create_app from model.db import db from pytest_config import TestConfig @@ -150,7 +149,6 @@ def _create_user(_test_client): "code": "", }, ) - assert response.status_code == 201 @@ -186,7 +184,7 @@ def _test_invite_study_contributor(_logged_in_client): assert response.status_code == 201 response_data = json.loads(response.data) - + print("permission given", response_data) pytest.global_editor_token = response_data["token"] response = _logged_in_client.post( diff --git a/tests/functional/test_server_launch.py b/tests/functional/test_010_server_launch.py similarity index 100% rename from tests/functional/test_server_launch.py rename to tests/functional/test_010_server_launch.py diff --git a/tests/functional/test_study_api.py b/tests/functional/test_020_study_api.py similarity index 100% rename from tests/functional/test_study_api.py rename to tests/functional/test_020_study_api.py diff --git a/tests/functional/test_study_dataset_api.py b/tests/functional/test_030_study_dataset_api.py similarity index 100% rename from tests/functional/test_study_dataset_api.py rename to tests/functional/test_030_study_dataset_api.py diff --git a/tests/functional/test_study_dataset_metadata_api.py b/tests/functional/test_040_study_dataset_metadata_api.py similarity index 99% rename from tests/functional/test_study_dataset_metadata_api.py rename to tests/functional/test_040_study_dataset_metadata_api.py index aad43499..e6a9d927 100644 --- a/tests/functional/test_study_dataset_metadata_api.py +++ b/tests/functional/test_040_study_dataset_metadata_api.py @@ -3145,7 +3145,6 @@ def test_get_dataset_related_identifier_metadata(clients): # assert len(admin_response_data) == 3 # assert len(editor_response_data) == 3 # assert len(viewer_response_data) == 3 - print(len(response_data), "lennnnnnnnnn") assert response_data[0]["identifier"] == "test identifier" assert response_data[0]["identifier_type"] == "test identifier type" assert response_data[0]["relation_type"] == "test relation type" diff --git a/tests/functional/test_study_metadata_api.py b/tests/functional/test_050_study_metadata_api.py similarity index 100% rename from tests/functional/test_study_metadata_api.py rename to tests/functional/test_050_study_metadata_api.py diff --git a/tests/functional/test_study_version_api.py b/tests/functional/test_060_study_version_api.py similarity index 100% rename from tests/functional/test_study_version_api.py rename to tests/functional/test_060_study_version_api.py diff --git a/tests/functional/test_user.py b/tests/functional/test_070_user.py similarity index 100% rename from tests/functional/test_user.py rename to tests/functional/test_070_user.py